CS507
Fundamentals of Research

Fall 2013
Schedule

PhD Comics

Note that this schedule is a guide and may vary as the semester proceeds.

Week Dates TopicSlidesAssignmentComments and Topics
1 8/26-8/30 Course Introduction Week 1 slides Due Weds, Sept. 4th: Read and Review using the Gentic Programming and Evolvable Machines (journal) review form, the paper "Social Integration of Robots into Groups of Cockroaches to Control Self-Organized Choices", J. Halloy et al, Science, 16 November 2007: 1155-1158.
Course intro. Why research and writting? Grad school. Introduction to research.
Sample review forms: Genetic and Evolutionary Computation COnference (GECCO), Gentic Programming and Evolvable Machines (journal), Artificial Intelligence (journal)
2 9/2-9/6 Papers Week 2 slides Introduction assignment due Friday, Sept. 13th No class Monday Sept. 2nd

Submission process, paper stucture. Science paper.
3 9/9-9/13 Literature Searches and Basic Latex Week 3 slides Read Stu Steiner's proposal. If possible attend his proposal defense Sept. 17th, 1:00 pm, JEB328 Literature searches, maintaining a bibliography, review papers. Basic Latex.
4 9/16-9/20 Paper structure Week 4 slides Intro. and background assignment due Friday, Sept. 27th
Design of an Artificial Immune System for fault detection: A Negative Selection Approach read for Friday Sept. 27th.
Overall structure, abstracts, introductions, background. Paper Outline notes on introductions from Friday's lecture
5 9/23-9/27 More on paper structure Week 5-6 slides Read and review using the GECCO review form:
An Algorithm for Distributed On-Line, On-Board Evolutonary Robotics
Racing to Improve On-Line, On-Board Evolutonary Robotics
Read, but you don't need to review:
Ph.D. Student must break away from the Undergraduate Mentality or read the original blog post with comments: Blog post
Add summaries of two more papers to your background and find 3 more papers to cite. Think about which paper you would like to share with the class.
Methods, results, figures, graphs, tables, captions.
6 9/30-10/4 Paper structure Week 6-7 slides No class Wednesday, Oct. 2nd.
7 10/7-10/11 Writing and flow Topic sentences, outlines.
8 10/14-10/18 Writing and flow; Titles Week 8 slides Read by Monday, Oct. 21 (no review necessary):
The Task of the Referee, by Alan J. Smith
Testing Heuristics: We Have It All Wrong
Google Proposal and Google CFP
Flow, using lists, sections, subsections, outlines, using bold, italics, etc. Titles
Planning that title: Practices and preferences for titles with colons in academic articles
Blog post: How to compose a title for your research paper
9 10/21-10/25 Research (testing algorithms), Reviewers, and Abstracts Due 10/28/2013: A title, a paper you are willing to assign and present. Discussing "The Task of the Reference" and "Testing Heuristics: We Have it All Wrong". Abstracts.
10 10/28-11/1 Results Section 11/11/2013: A "complete" introduction and background. For the introduction make sure that the broad topic area, its importance, and specific problem your research addresses are both presented clearly. Make sure that the goal/hypothesis/aim of the research is clear. In the background use the related research to present the current state of the art: what has been accomplished/is know, and what remains to be done/is unknown. Use that to justify your research and approach.
11/4/2013: Print, read, and edit the paper Neuroevolution of a trail following robotic controller for an autonomous CotsBot. In addition, anonymously, fill out and turn in a GPEM review form (linked at the top of this page). Clearly this paper is still being written, but do your best on the evaluation.
Presenting data, graphs, captions, tables, etc. Discussing results.
11 11/4-11/8 More paper reviews 11/6/2013: Print and read the paper ARC: A self-tuning, low overhead replacement cache". In addition, fill out (not anonymously as this isn't a student's paper) and turn in a GPEM review form (linked at the top of this page).
11/11/2013: Print, edit, and read the paper "Clicker Training". In addition, fill out (anonymously as this is student's paper) and turn in a GPEM review form (linked at the top of this page).
11/13/2013: Print and read the paper "Comparison of Genetic-based Feature Extraction Methods for Facial Recognition" In addition, fill out (not anonymously as this isn't a student's paper) and turn in a GPEM review form (linked at the top of this page).
Presentations
12 11/11-11/15 More papers and statistics 11/22/2013: Write part of a methods and results section. For the methods section describe one experiment you propose to do. Include as much detail (for replicability) as possible. If you are working on an "engineering project", describe one component of the program/system. For the resutls section create one graph or table. It does not need to contain real data, but should be labeled and captioned correctly and describe the expected data.
11/18/2013: Print and read the paper "Length Bias and Search Limitations in Cartesian Genetic Programming" In addition, fill out (not anonymously as this isn't a student's paper) and turn in a GPEM review form (linked at the top of this page).
11/20/2013: Print and read the paper "In VANETs we Trust?" In addition, fill out (not anonymously as this isn't a student's paper) and turn in a GPEM review form (linked at the top of this page).
Review 1, Review 2, Paper
Basic statistics, Null hypotheses, student t-tests.
13 11/18-11/22 John and Hani's papers
11/25-11/29 Fall Break
14 12/2-12/6 Papers and grants 12/2/2013: Print and read the paper "A Lightweight Architecture for Program Execution monitoring" In addition, fill out (not anonymously as this isn't a student's paper) and turn in a GPEM review form (linked at the top of this page).
12/4/2013: Print and read the paper "Learned Anticipation Strategy for Speed Control in an AUV Fleet" In addition, fill out (not anonymously as this isn't a student's paper) and turn in a GPEM review form (linked at the top of this page).
12/13/2013 Paper/thesis draft with title, intro and background, one set of methods, one set of sample results, and an outline of the rest of the thesis/paper. Try to include 20-30 outline entries.
Friday, intro to grant writing
15 12/9-12/13 Grant Writing Fill out the course evaluation. This course is taught infequently and doesn't follow standard models, so any feedback is welcome. In fact, you're on-line right now ...
16 12/16-12/20 No Final Exam